arXiv:2606.25826v2
Abstract
Complex systems, from gene regulatory networks to neural circuits and ecological food webs, exhibit rich functional behaviour that topology alone does not capture. Yet functional complexity remains difficult to quantify independently of structural organisation. Here we introduce a thermodynamic framework in which functional complexity is characterised through the hierarchical organisation of functional memory, quantifying how the influence of past interactions is distributed and progressively compressed across scales. Across thirty-four empirical networks spanning biological, ecological, social, technological, and biophysical systems and several orders of magnitude in size and density, real interaction strengths organise functional memory at greater hierarchical depth than random weight assignment on the same topology in every domain studied. The framework further reveals that functional memory occupies a remarkably low-dimensional space, collapsing onto four recurrent dynamical organisations. Comparisons with null models that selectively perturb weighted transport geometry, mesoscale wiring, and directionality show that these structural ingredients play distinct roles: weighted transport geometry systematically governs memory depth, whereas mesoscale wiring organises memory across scales and directionality modulates the response of the cascade to structural perturbation. The same comparisons provide an operational criterion for determining whether network weights encode functionally meaningful structure beyond topology. These results establish weighted transport geometry as a primary organiser of functional memory and provide a quantitative framework for studying functional complexity in directed weighted networks.
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Not a correctness certificate. A “Correct” result may include yellow typos or minor formal corrections that do not affect substantive soundness. It means this audit found no unresolved substantive error under the stated criteria; it does not replace expert scrutiny or formal verification.
Current report
Detailed mathematical audit
01Statements3 reported findingsContains unsupported statements
Several central interpretations of the proposed memory signature are not supported by the definitions or controls: protocol independence is stronger than the proved scale cancellation, the unsigned Wasserstein distance does not encode direction, and the geometric null model retains the original edgewise expected weight pattern.
Only a scale factor cancels; arbitrary monotone protocols can change the signature
Pages 5–7 · Section S4 and the protocol-independence claim · arXiv:2606.25826v2
Section S4 shows cancellation of the single scale parameter . The remaining exponent and the distribution of protocol points enter the ratios and normalized masses. A general monotone reparameterization preserves ordering but not those ratios, so the broader claim that the signature is independent of the specific protocol is not established.
A positive Wasserstein distance does not show movement toward deeper scales
Pages 4–6 · interpretation of Figure 2 · arXiv:2606.25826v2
The first Wasserstein distance is nonnegative and symmetric. Its positivity shows that two distributions differ, but contains no sign or orientation from which redistribution toward deeper rather than shallower scales can be inferred. A directional statistic or an additional stochastic-order comparison would be needed.
Independent edge resampling does not erase the original expected placement pattern
Pages 7–9 · definition and interpretation of the GFM control · arXiv:2606.25826v2
Each edge is sampled independently with mean equal to that same edge's original weight. Consequently, for a path with distinct edges, the expected product equals the original product, so the ensemble retains the original spatially indexed expected weight pattern. The control therefore does not by itself isolate the effect of weight geometry in the manner claimed.
02Proofs2 reported findingsContains incorrect or incomplete proofs
The algebraic argument proves only a narrow scale invariance, and the statistical controls do not justify the directional and causal interpretations assigned to them.
The invariance argument is extended beyond its proved parameter
Pages 5–7 · Section S4 · arXiv:2606.25826v2
The calculation removes but supplies no invariance under changes of or under arbitrary monotone protocol maps. Those transformations alter the normalized scale spacing used in the signature. No additional lemma establishes the stronger conclusion.
The control does not randomize the edgewise mean field
Pages 7–9 · GFM analysis · arXiv:2606.25826v2
Independence removes cross-edge sampling correlations, but preserving each individual edge mean preserves the full original expected matrix. Thus the comparison cannot be interpreted as removing weight placement while holding only the marginal distribution fixed. A verified repair would require a genuinely exchangeable or explicitly permuted null model and a renewed analysis; none is supplied.
03Novelty0 reported findingsNo non-novelty findings
No non-novelty findings.